PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8165_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 267aa    MW: 28120.7 Da    PI: 6.5187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8165_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.4e-06881231555
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  RrC8165_p3  88 RIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 123
                 8999***********7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.35773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-684128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-687127No hitNo description
SuperFamilySSF474592.36E-1087131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1188129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MLSSLPPCWD SSLPPPHPPP PPPPQSLLHA LTVDASFPDQ SQVAQAKMGC RYKEQSPPRA  60
HLWPVRSQGS ELGEAKPQIL TALLSGERIA ERMKSLQELV PNTNKTDKAS MLDEIIEYVR  120
FLQLQVKVLS VSRLGGARAA GGPGFNGLTS EVGGRLNALS GPSNGVNGNR NGTGSSNESL  180
RSTEQRVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAISS SSTASSHSRG SLFNPSLNVV  240
AAEETNVAVA AAEASTSMDD DVSASKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866244.11e-106basic helix-loop-helix family protein
SwissprotQ9LSQ31e-107BH082_ARATH; Transcription factor bHLH82
TrEMBLD7MNY81e-106D7MNY8_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pm.C_scaffold_80014351e-106(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-71LJRHL1-like 3